Your comments

It was staring me in the face the whole time.  I got focused on my ubooquity folder and totally forgot about all the html files in my data folders.  Thanks so much.

Also, my thanks for the theme, I've used for at least the past three years and it + ubooquity bring me great joy.  

First, thanks to Scott for all of this!  Second, can someone point me to why my index files keep trying to point to resources in the old theme? The new theme works (50%) of the time.

I find that when it doesn't work it's because it's trying to access theme.js and jquery-3.1.1.min.js, then themeScript.js throws an "Uncaught Error: Syntax error, unrecognized expression: unsupported pseudo: exact" and the page doesn't load.  Just to clarify, when it works, it tries to access those assets and then simply goes to themeScript.js just fine.  I think* the issue can be traced back to my index files.  Each one of them gets built with a link to theme.js and jquery-3.1.1 (see below)

I've cleared my db, cleared my cache/forced reload, restarted my server, etc.  Any suggestions or things that could point me in the right direction?

Anyone else get:

./ line 31: [[[: command not found
./ line 31: [: missing `]'

The script still runs, but I just want to make sure I'm not missing something.

Thanks for all the work on this. It's an amazing theme.