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I have been playing with the folder and file permissions for Ubooquity. Kind of got it working. Basically gave permissions to the rules and folder for the user that is running the Java .jar. In my cause it was root. Still not 100% sure what I did to get it working. I was able to add a comics folder but I can't seem to access the admin page anymore.
I just emailed it to you. Thanks for your help!
"Sorry, you are not authorized to access any file on this server"
When I click set password no file is created. It just goes to page can not be found. When I go the main ip address, It tells me that I do not have permission to view anything on this server. But if I go to the admin page it will ask for me to set the admin password. Just wont get past that screen. I don't know if there is additional permissions or settings I need to do or change. I followed the directions 100%.